# Core viromics environment: QC, assembly, and general utilities.
# Create with:  conda env create -f envs/viromics-core.yml
# Then:         conda activate viromics-core
name: viromics-core
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python=3.10
  - fastqc
  - multiqc
  - fastp
  - trimmomatic
  - seqkit
  - megahit
  - spades
  - quast
  - prodigal
  - cd-hit
  - bowtie2
  - samtools
  - coverm
  - mafft
  - iqtree
  - blast
  - pandas
  - numpy