Course Content
00: Resources
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Bioinformatics ka Chilla – LMS Access terms and conditions
01:34
Discord Server
01:49
Linux/Unix Cheatsheet
GitHub repo for this course
01: Course Introduction and Registration
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Course Introduction: Bioinformatics Ka Chilla | A Complete Course on Bioinformatics
12:27
Bioinformatics Ka Chilla | Complete Registration Process for Bioinformatics Course
01:46
02: Know your Instructor
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Know Your Instructor for Bioinformatics Ka Chilla | Meet the Expert Behind the Bioinformatics Course
10:33
03: What is Bioinformatics?
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Introduction to Bioinformatics for Beginners | Learn Biological Data Science in Urdu | Codanics
12:44
04: Coding for Bioinformatics
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GUI vs CLI for Bioinformatics & Data Science: Which One Should You Choose?
12:40
Tip for Programmers or Coders for Bioinformatics: Automate Tasks and Focus on Scripting
05:26
3 Essential Skills to Become an Expert Bioinformatician | Must-Know Skills for Bioinformatics
09:56
05: Linux-Everything you need to know
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Intro to Linux and Linux Distributions for Bioinformatics and Data Science
11:03
Linux Mint Installation as virtual machine in virtual box in windows
33:01
Linux Mint Installation Guide for Bioinformaticians A – Z in Urdu | Codanics
01:16:56
Keep Your Linux Mint Up to Date with These Easy Commands & Tips | sudo apt update & upgrade
03:57
Screen resolution and font size settings in linux mint
02:28
Startup applications in linux mint can speedup your linux PC
01:14
Install latest codecs and fonts plus extras in linux mint
02:25
Firewall configuration on linux mint for everyone
01:28
Pannel taskbar and folder settings in linux mint
05:07
Keyboard shortcuts to launch panel apps in linux mint
02:06
Night light settings for blue light filter in linux mint using redshift
03:19
TLP package to optimize battery life of linux laptop
01:20
Hot-corners in linux mint for mouse shortcuts
02:42
Mouse / touch pad gestures in linux mint
02:07
Workspaces in linux mint and touchpad gestures
02:07
Desktop zooming options in linux mint for better understanding
03:49
Keyboard Shortcuts for linux mint
02:53
Software manager settings for better results in linux mint
03:12
Install google chrome or any other software for linux mint
02:20
Applets and Desklets in Linux Mint to make your desktop amazingly charming
20:36
Linux Mint Extensions for Desktop Beautification and professional look
09:21
Desktop settings and icons on linux mint
04:03
Basic Linux commands in Linux Mint terminal (Part-1)
17:00
Paths and Working directories in Linux Mint
05:39
Basic Linux Commands in Linux Mint (Part-2)
09:51
File Permission chmod Commands in Linux Mint | Manage File Access Efficiently
09:49
Combining Commands & Using -y Option in Linux Mint | Beginner-Friendly Linux Tips
03:14
Create Your First Shell Script and Execute It in Linux Mint | Beginner Shell Scripting Guide
10:40
Create a Shell Script Using Terminal + wget Command in Linux Mint | Automate File Downloads
10:50
Combine Content of Two Files into One & Write Terminal Output to File in Linux Mint | Easy Guide
05:49
View Large Files Using less, more, head, and tail Commands in Linux Mint Terminal | Easy Tutorial
05:49
grep Commands to View Files with Patterns in Linux Mint and –help Flags for Any Command | Full Guide
15:22
awk BASH Command in Linux Mint for Bioinformatics and Data Science | Data Manipulation Made Easy
24:05
sed BASH Command in Linux for Data Science and Bioinformatics | Text Processing Made Easy
17:33
Terminal Settings in Linux Mint for Bold and Zoomed-In Font Size and Style
07:21
06: Zoom Meetings to know everyone
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Zoom Meeting No. 1
45:50
07: File Formats
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Important File Formats for Linux | CSV, TSV, TXT, FASTQ, FASTQ.GZ, FASTA, fna, faa Explained
55:08
08: VScode installation
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VScode installation and other software installation methods in Linux mint
10:41
09: Conda environments for Bioinformatics
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Conda, Mamba & Python Environments for Bioinformatics and Data Science | Manage Packages Like a Pro
19:49
Install Miniconda in Linux Mint | Step-by-Step Guide for Bioinformatics & Data Science
08:30
Install Mamba in Linux Mint | Faster Alternative to Conda for Bioinformatics & Data Science
03:21
Create Conda Environments in Linux | Comprehensive Miniconda Guide for Bioinformatics & Data Science
32:15
10: git and gitHub
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Git & GitHub in Linux for Bioinformaticians | Version Control Made Easy
10:08
11: R and RStudio
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Install R and RStudio in Linux Using Command Line | Complete Guide for Data Science & Bioinformatics
06:59
R Programming Crash Course (11 h 55 m) – Learn R with Dr Aammar Tufail | Urdu/Hindi #rwithaammar
11:55:37
12: Linux Tool installation and use for Bioinformatics
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Linux tips and updates about software use in bioinformatics
08:01
Tools installation and use | grabseqs and sequences download from NCBI
36:04
Download raw data from a manuscript from NCBI
03:45
Downloading raw data using terminal and other commands
05:18
Download completed in terminal with fasq.gz files having less space
04:54
Metadata related to fastq files and csv file opening in libre office linux
04:19
13: Sequencing Technologies
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Seuencing Technologies
14: Quality Control of Short Reads
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Quality control of short reads using fastqc and multiqc | understanding number of threads in Linux
39:23
15: DNA and DNA sequencing
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DNA and DNA Sequencing Technologies | Short Reads vs. Long Reads
33:15
Important Guide about sequencing technology
04:15
Sequencing workflow and fastq files | zipped vs. unzipped files
10:35
Bases vs. Base pairs in genome sequencing
04:44
16: Genes and Genome
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Difference between Genes and Genomes
How big is a genome and how does it looks like?
13:47
17: Prokaryotic vs. Eukaryotic Genomes as bioinformatician’s perspective
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Prokaryotes or unicellular organisms
10:27
Eukaryotes or Multicellular organisms
08:31
Prokaryotes vs. Eukaryotes Major differences
09:19
Prokaryotic genome structure
11:40
How to calculate GC content in a genome?
01:27
Eukaryotic genome structure | Exons vs. Introns
14:07
Genome Size Comparison Prokaryotes vs. Eukaryotic genomes
02:33
Prokaryotic genes vs. Eukaryotic Genes structures
02:54
Why should you start learning from prokaryotic genomes? | Bioinformatics
06:28
Resources and Databases for Prokaryotic & Eukaryotic Bioinformatics
02:17
Tools for Prokaryotic vs. Eukaryotic Bioinformatics analysis
02:21
Real Wold Application and Job Market | Prokaryotic vs. Eukaryotic Bioinformatics
04:25
Complete Guide with Notes
Quizzes-01
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Quizzes for Practice _ Bioinformatics ka chilla
02:12
Quiz No. 1: Linux and Conda Quiz
Quiz No. 2: Prokaryotes, Eukaryotes, Genes, Genomes & Sequencing Technologies
18: Marker Gene Analysis | 16S rRNA, 18S rRNA, ITS
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16S rRNA gene and its importance for Microbial Ecology
36:46
What is taxonomy?
01:29
Levels of Taxonomy for Bacteria | Understanding Classification Theory with Examples
20:45
18S rRNA and ITS for community analysis | Metabarcoding | Amplicon sequencing
43:19
19: VScode, Git, GitHub, Markdown
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Install and use VScode in Linux as editor and IDE with sync from your github
11:17
VScode experties | files, folders, interface, and settings
10:23
VScode extensions
07:27
Version control systems for coding and git
16:47
Git installation
01:33
Git CheatSheet
Git with terminal | local repository commands
22:55
Git with VScode for local repository making and tracking changes
04:56
hidden folder (.git ) and reseting repo
01:02
Git and GitHub using VScode to sync and use online repo
12:17
Git cloning online public repositories with three methods
05:44
Complete Markdown Guide | 72 Minutes (Adapt to Linux lecture is in Windows)
01:11:23
20: Whole Genome Sequencing (WGS) and Genome Assembly workflow
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Intro to whole genome sequencing and assembly
27:24
Select the paper and bacterial strain for raw sequence RAW reads files
36:36
Extract raw reads from NCBI SRA using grabseqs
22:01
Bioinformatics Ka Chilla
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