Course Content
00: Resources
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Bioinformatics ka Chilla – LMS Access terms and conditions
01:34
Discord Server
01:49
Linux/Unix Cheatsheet
GitHub repo for this course
01: Course Introduction and Registration
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Course Introduction: Bioinformatics Ka Chilla | A Complete Course on Bioinformatics
12:27
Bioinformatics Ka Chilla | Complete Registration Process for Bioinformatics Course
01:46
02: Know your Instructor
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Know Your Instructor for Bioinformatics Ka Chilla | Meet the Expert Behind the Bioinformatics Course
10:33
03: What is Bioinformatics?
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Introduction to Bioinformatics for Beginners | Learn Biological Data Science in Urdu | Codanics
12:44
04: Coding for Bioinformatics
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GUI vs CLI for Bioinformatics & Data Science: Which One Should You Choose?
12:40
Tip for Programmers or Coders for Bioinformatics: Automate Tasks and Focus on Scripting
05:26
3 Essential Skills to Become an Expert Bioinformatician | Must-Know Skills for Bioinformatics
09:56
05: Linux-Everything you need to know
0/35
Intro to Linux and Linux Distributions for Bioinformatics and Data Science
11:03
Linux Mint Installation as virtual machine in virtual box in windows
33:01
Linux Mint Installation Guide for Bioinformaticians A – Z in Urdu | Codanics
01:16:56
Keep Your Linux Mint Up to Date with These Easy Commands & Tips | sudo apt update & upgrade
03:57
Screen resolution and font size settings in linux mint
02:28
Startup applications in linux mint can speedup your linux PC
01:14
Install latest codecs and fonts plus extras in linux mint
02:25
Firewall configuration on linux mint for everyone
01:28
Pannel taskbar and folder settings in linux mint
05:07
Keyboard shortcuts to launch panel apps in linux mint
02:06
Night light settings for blue light filter in linux mint using redshift
03:19
TLP package to optimize battery life of linux laptop
01:20
Hot-corners in linux mint for mouse shortcuts
02:42
Mouse / touch pad gestures in linux mint
02:07
Workspaces in linux mint and touchpad gestures
02:07
Desktop zooming options in linux mint for better understanding
03:49
Keyboard Shortcuts for linux mint
02:53
Software manager settings for better results in linux mint
03:12
Install google chrome or any other software for linux mint
02:20
Applets and Desklets in Linux Mint to make your desktop amazingly charming
20:36
Linux Mint Extensions for Desktop Beautification and professional look
09:21
Desktop settings and icons on linux mint
04:03
Basic Linux commands in Linux Mint terminal (Part-1)
17:00
Paths and Working directories in Linux Mint
05:39
Basic Linux Commands in Linux Mint (Part-2)
09:51
File Permission chmod Commands in Linux Mint | Manage File Access Efficiently
09:49
Combining Commands & Using -y Option in Linux Mint | Beginner-Friendly Linux Tips
03:14
Create Your First Shell Script and Execute It in Linux Mint | Beginner Shell Scripting Guide
10:40
Create a Shell Script Using Terminal + wget Command in Linux Mint | Automate File Downloads
10:50
Combine Content of Two Files into One & Write Terminal Output to File in Linux Mint | Easy Guide
05:49
View Large Files Using less, more, head, and tail Commands in Linux Mint Terminal | Easy Tutorial
05:49
grep Commands to View Files with Patterns in Linux Mint and –help Flags for Any Command | Full Guide
15:22
awk BASH Command in Linux Mint for Bioinformatics and Data Science | Data Manipulation Made Easy
24:05
sed BASH Command in Linux for Data Science and Bioinformatics | Text Processing Made Easy
17:33
Terminal Settings in Linux Mint for Bold and Zoomed-In Font Size and Style
07:21
06: Zoom Meetings to know everyone
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Zoom Meeting No. 1
45:50
07: File Formats
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Important File Formats for Linux | CSV, TSV, TXT, FASTQ, FASTQ.GZ, FASTA, fna, faa Explained
55:08
08: VScode installation
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VScode installation and other software installation methods in Linux mint
10:41
09: Conda environments for Bioinformatics
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Conda, Mamba & Python Environments for Bioinformatics and Data Science | Manage Packages Like a Pro
19:49
Install Miniconda in Linux Mint | Step-by-Step Guide for Bioinformatics & Data Science
08:30
Install Mamba in Linux Mint | Faster Alternative to Conda for Bioinformatics & Data Science
03:21
Create Conda Environments in Linux | Comprehensive Miniconda Guide for Bioinformatics & Data Science
32:15
10: git and gitHub
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Git & GitHub in Linux for Bioinformaticians | Version Control Made Easy
10:08
11: R and RStudio
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Install R and RStudio in Linux Using Command Line | Complete Guide for Data Science & Bioinformatics
06:59
R Programming Crash Course (11 h 55 m) – Learn R with Dr Aammar Tufail | Urdu/Hindi #rwithaammar
11:55:37
12: Linux Tool installation and use for Bioinformatics
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Linux tips and updates about software use in bioinformatics
08:01
Tools installation and use | grabseqs and sequences download from NCBI
36:04
Download raw data from a manuscript from NCBI
03:45
Downloading raw data using terminal and other commands
05:18
Download completed in terminal with fasq.gz files having less space
04:54
Metadata related to fastq files and csv file opening in libre office linux
04:19
13: Sequencing Technologies
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Seuencing Technologies
14: Quality Control of Short Reads
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Quality control of short reads using fastqc and multiqc | understanding number of threads in Linux
39:23
15: DNA and DNA sequencing
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DNA and DNA Sequencing Technologies | Short Reads vs. Long Reads
33:15
Important Guide about sequencing technology
04:15
Sequencing workflow and fastq files | zipped vs. unzipped files
10:35
Bases vs. Base pairs in genome sequencing
04:44
16: Genes and Genome
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Difference between Genes and Genomes
How big is a genome and how does it looks like?
13:47
17: Prokaryotic vs. Eukaryotic Genomes as bioinformatician’s perspective
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Prokaryotes or unicellular organisms
10:27
Eukaryotes or Multicellular organisms
08:31
Prokaryotes vs. Eukaryotes Major differences
09:19
Prokaryotic genome structure
11:40
How to calculate GC content in a genome?
01:27
Eukaryotic genome structure | Exons vs. Introns
14:07
Genome Size Comparison Prokaryotes vs. Eukaryotic genomes
02:33
Prokaryotic genes vs. Eukaryotic Genes structures
02:54
Why should you start learning from prokaryotic genomes? | Bioinformatics
06:28
Resources and Databases for Prokaryotic & Eukaryotic Bioinformatics
02:17
Tools for Prokaryotic vs. Eukaryotic Bioinformatics analysis
02:21
Real Wold Application and Job Market | Prokaryotic vs. Eukaryotic Bioinformatics
04:25
Complete Guide with Notes
Quizzes-01
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Quizzes for Practice _ Bioinformatics ka chilla
02:12
Quiz No. 1: Linux and Conda Quiz
Quiz No. 2: Prokaryotes, Eukaryotes, Genes, Genomes & Sequencing Technologies
18: Marker Gene Analysis | 16S rRNA, 18S rRNA, ITS
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16S rRNA gene and its importance for Microbial Ecology
36:46
What is taxonomy?
01:29
Levels of Taxonomy for Bacteria | Understanding Classification Theory with Examples
20:45
18S rRNA and ITS for community analysis | Metabarcoding | Amplicon sequencing
43:19
19: VScode, Git, GitHub, Markdown
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Install and use VScode in Linux as editor and IDE with sync from your github
11:17
VScode experties | files, folders, interface, and settings
10:23
VScode extensions
07:27
Version control systems for coding and git
16:47
Git installation
01:33
Git CheatSheet
Git with terminal | local repository commands
22:55
Git with VScode for local repository making and tracking changes
04:56
hidden folder (.git ) and reseting repo
01:02
Git and GitHub using VScode to sync and use online repo
12:17
Git cloning online public repositories with three methods
05:44
Complete Markdown Guide | 72 Minutes (Adapt to Linux lecture is in Windows)
01:11:23
20: Whole Genome Sequencing (WGS) and Genome Assembly workflow
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Intro to whole genome sequencing and assembly
27:24
Select the paper and bacterial strain for raw sequence RAW reads files
36:36
Extract raw reads from NCBI SRA using grabseqs
22:01
Bioinformatics Ka Chilla

    ——————————————————————————————————————- In this video, we’ll guide you through the process of installing Linux Mint as a virtual machine (VM) in VirtualBox on your Windows system.

    🐧💻 This method allows you to experience Linux Mint without making any changes to your existing Windows setup, making it perfect for users who want to explore Linux for Data Science, Bioinformatics, coding, or general Linux use.

    ⸻ 🔧 What You’ll Learn: • How to download and install VirtualBox on Windows • How to create a new Virtual Machine in VirtualBox • Step-by-step instructions for installing Linux Mint as a VM • Linux Mint installation options and configuration settings • How to set up virtual machine resources (memory, storage, etc.) • Post-installation steps to optimize Linux Mint VM performance • Accessing and using Linux Mint on your Windows machine through VirtualBox Whether you’re a Linux beginner, Data Science enthusiast, or Bioinformatics learner, this guide is perfect for setting up a powerful Linux Mint VM for experimentation and learning.

    ⸻ 🎯 Perfect For: • Students learning Linux • Data Scientists and Bioinformaticians • Developers wanting a Linux environment on Windows • Anyone wanting to try Linux without affecting their main operating system

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